Nikolai R. Skrynnikov : rechercher sur Z-Library

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1

Reconstructing NMR Spectra of “Invisible” Excited Protein States Using HSQC and HMQC Experiments

Skrynnikov, Nikolai R., Dahlquist, Frederick W., Kay, Lewis E.

Journal:

Journal of the American Chemical Society

Année:

2002

Langue:

english

Fichier:

PDF, 193 KB

english, 2002

2

Role of Electrostatic Interactions in Binding of Peptides and Intrinsically Disordered Proteins to Their Folded Targets. 1. NMR and MD Characterization of the Complex between the c-Crk N-SH3 Domain and the Peptide Sos

Xue, Yi, Yuwen, Tairan, Zhu, Fangqiang, Skrynnikov, Nikolai R.

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 5.02 MB

english, 2014

3

Introducing color into stacking gels makes sample loading easy

Yaroslav Ryabov, Corey White, Yi Xue, Nikolai R. Skrynnikov

Journal:

Analytical Biochemistry

Année:

2007

Langue:

english

Fichier:

PDF, 178 KB

english, 2007

4

Orienting molecular fragments and molecules with residual dipolar couplings

Nikolai R. Skrynnikov

Journal:

Comptes Rendus Physique

Année:

2004

Fichier:

PDF, 632 KB

2004

5

Microsecond time-scale dynamics from relaxation in the rotating frame: experiments using spin lock with alternating phase

Ivan S. Podkorytov, Nikolai R. Skrynnikov

Journal:

Journal of Magnetic Resonance

Année:

2004

Langue:

english

Fichier:

PDF, 269 KB

english, 2004

6

Paramagnetic relaxation enhancements in unfolded proteins: Theory and application to drkN SH3 domain

Yi Xue, Ivan S. Podkorytov, D. Krishna Rao, Nathan Benjamin, Honglei Sun, Nikolai R. Skrynnikov

Journal:

Protein Science

Année:

2009

Langue:

english

Fichier:

PDF, 1.76 MB

english, 2009

7

A New Amide ProtonR1ρExperiment Permits Accurate Characterization of Microsecond Time-scale Conformational Exchange

Christian Eichmüller, Nikolai R. Skrynnikov

Journal:

Journal of Biomolecular NMR

Année:

2005

Langue:

english

Fichier:

PDF, 487 KB

english, 2005

8

Estimating the Accuracy of Protein Structures using Residual Dipolar Couplings

Katya Simon, Jun Xu, Chinpal Kim, Nikolai R. Skrynnikov

Journal:

Journal of Biomolecular NMR

Année:

2005

Langue:

english

Fichier:

PDF, 307 KB

english, 2005

9

Comparison of13CH3,13CH2D, and13CHD2methyl labeling strategies in proteins

Jason E. Ollerenshaw, Vitali Tugarinov, Nikolai R. Skrynnikov, Lewis E. Kay

Journal:

Journal of Biomolecular NMR

Année:

2005

Langue:

english

Fichier:

PDF, 878 KB

english, 2005

10

Observation of

Christian Eichmüller, Nikolai R. Skrynnikov

Journal:

Journal of Biomolecular NMR

Année:

2007

Langue:

english

Fichier:

PDF, 877 KB

english, 2007

11

Detection of nanosecond time scale side-chain jumps in a protein dissolved in water/glycerol solvent

Jun Xu, Yi Xue, Nikolai R. Skrynnikov

Journal:

Journal of Biomolecular NMR

Année:

2009

Langue:

english

Fichier:

PDF, 650 KB

english, 2009

12

15NH/D-SOLEXSY experiment for accurate measurement of amide solvent exchange rates: application to denatured drkN SH3

Veniamin Chevelkov, Yi Xue, D. Krishna Rao, Julie D. Forman-Kay, Nikolai R. Skrynnikov

Journal:

Journal of Biomolecular NMR

Année:

2010

Langue:

english

Fichier:

PDF, 776 KB

english, 2010

13

Domain cooperativity in multidomain proteins: what can we learn from molecular alignment in anisotropic media?

Tairan Yuwen, Carol Beth Post, Nikolai R. Skrynnikov

Journal:

Journal of Biomolecular NMR

Année:

2011

Langue:

english

Fichier:

PDF, 2.31 MB

english, 2011

14

Domain orientation in β-cyclodextrin-loaded maltose binding protein: Diffusion anisotropy measurements confirm the results of a dipolar coupling study

Peter M. Hwang, Nikolai R. Skrynnikov, Lewis E. Kay

Journal:

Journal of Biomolecular NMR

Année:

2001

Langue:

english

Fichier:

PDF, 163 KB

english, 2001

15

High Resolution 1H Detected 1H,13C Correlation Spectra in MAS Solid-State NMR using Deuterated Proteins with Selective 1H,2H Isotopic Labeling of Methyl Groups

Agarwal, Vipin, Diehl, Anne, Skrynnikov, Nikolai, Reif, Bernd

Journal:

Journal of the American Chemical Society

Année:

2006

Langue:

english

Fichier:

PDF, 56 KB

english, 2006

16

Microsecond Time-Scale Conformational Exchange in Proteins: Using Long Molecular Dynamics Trajectory To Simulate NMR Relaxation Dispersion Data

Xue, Yi, Ward, Joshua M., Yuwen, Tairan, Podkorytov, Ivan S., Skrynnikov, Nikolai R.

Journal:

Journal of the American Chemical Society

Année:

2012

Langue:

english

Fichier:

PDF, 1.36 MB

english, 2012

17

Calculations of the Contribution of Ring Currents to the Chemical Shielding Anisotropy

Skrynnikov, Nikolai R., Boyd, Jonathan

Journal:

Journal of the American Chemical Society

Année:

2002

Langue:

english

Fichier:

PDF, 100 KB

english, 2002

18

Structural Determinants for High-Affinity Binding in a Nedd4 WW3∗ Domain-Comm PY Motif Complex

Voula Kanelis, M. Christine Bruce, Nikolai R. Skrynnikov, Daniela Rotin, Julie D. Forman-Kay

Journal:

Année:

2006

Langue:

english

Fichier:

PDF, 445 KB

english, 2006

19

Orienting domains in proteins using dipolar couplings measured by liquid-state NMR: differences in solution and crystal forms of maltodextrin binding protein loaded with β-cyclodextrin

Nikolai R. Skrynnikov, Natalie K. Goto, Daiwen Yang, Wing-Yiu Choy, Joel R. Tolman, Geoffrey A. Mueller, Lewis E. Kay

Journal:

Journal of Molecular Biology

Année:

2000

Langue:

english

Fichier:

PDF, 339 KB

english, 2000

20

What is the average conformation of bacteriophage T4 lysozyme in solution? a domain orientation study using dipolar couplings measured by solution NMR

Natalie K. Goto, Nikolai R. Skrynnikov, Frederick W. Dahlquist, Lewis E. Kay

Journal:

Journal of Molecular Biology

Année:

2001

Langue:

english

Fichier:

PDF, 603 KB

english, 2001

21

Ligand-induced structural changes to maltodextrin-binding protein as studied by solution NMR spectroscopy

Johan Evenäs, Vitali Tugarinov, Nikolai R Skrynnikov, Natalie K Goto, Ranjith Muhandiram, Lewis E Kay

Journal:

Journal of Molecular Biology

Année:

2001

Langue:

english

Fichier:

PDF, 718 KB

english, 2001

22

Relative Orientation of Peptide Planes in Proteins Is Reflected in Carbonyl−Carbonyl Chemical Shift Anisotropy Cross-Correlated Spin Relaxation

Skrynnikov, Nikolai R., Konrat, Robert, Muhandiram, D. R., Kay, Lewis E.

Journal:

Journal of the American Chemical Society

Année:

2000

Langue:

english

Fichier:

PDF, 276 KB

english, 2000

23

Very large residual dipolar couplings from deuterated ubiquitin

Joshua M. Ward, Nikolai R. Skrynnikov

Journal:

Journal of Biomolecular NMR

Année:

2012

Langue:

english

Fichier:

PDF, 639 KB

english, 2012

24

Measurement of Slow (μs−ms) Time Scale Dynamics in Protein Side Chains by 15 N Relaxation Dispersion NMR Spectroscopy: Application to Asn and Gln Residues in a Cavity Mutant of T4 Lysozyme

Mulder, Frans A. A., Skrynnikov, Nikolai R., Hon, Bin, Dahlquist, Frederick W., Kay, Lewis E.

Journal:

Journal of the American Chemical Society

Année:

2001

Langue:

english

Fichier:

PDF, 149 KB

english, 2001

25

Motion of a Disordered Polypeptide Chain as Studied by Paramagnetic Relaxation Enhancements, 15 N Relaxation, and Molecular Dynamics Simulations: How Fast Is Segmental Diffusion in Denatured Ubiquitin?

Xue, Yi, Skrynnikov, Nikolai R.

Journal:

Journal of the American Chemical Society

Année:

2011

Langue:

english

Fichier:

PDF, 2.40 MB

english, 2011

26

Detecting Protein Kinase Recognition Modes of Calmodulin by Residual Dipolar Couplings in Solution NMR †

Mal, Tapas K., Skrynnikov, Nikolai R., Yap, Kyoko L., Kay, Lewis E., Ikura, Mitsuhiko

Journal:

Année:

2002

Langue:

english

Fichier:

PDF, 448 KB

english, 2002

27

Comparison of Solid-State Dipolar Couplings and Solution Relaxation Data Provides Insight into Protein Backbone Dynamics

Chevelkov, Veniamin, Xue, Yi, Linser, Rasmus, Skrynnikov, Nikolai R., Reif, Bernd

Journal:

Journal of the American Chemical Society

Année:

2010

Langue:

english

Fichier:

PDF, 335 KB

english, 2010

28

Deuterium Spin Probes of Side-Chain Dynamics in Proteins. 2. Spectral Density Mapping and Identification of Nanosecond Time-Scale Side-Chain Motions

Skrynnikov, Nikolai R., Millet, Oscar, Kay, Lewis E.

Journal:

Journal of the American Chemical Society

Année:

2002

Langue:

english

Fichier:

PDF, 193 KB

english, 2002

29

CP-HISQC: a better version of HSQC experiment for intrinsically disordered proteins under physiological conditions

Yuwen, Tairan, Skrynnikov, Nikolai R.

Journal:

Journal of Biomolecular NMR

Année:

2014

Langue:

english

Fichier:

PDF, 2.03 MB

english, 2014

30

Proton-decoupled CPMG: A better experiment for measuring 15N R2 relaxation in disordered proteins

Yuwen, Tairan, Skrynnikov, Nikolai R.

Journal:

Journal of Magnetic Resonance

Année:

2014

Langue:

english

Fichier:

PDF, 1.97 MB

english, 2014

31

Methyl Rotation Barriers in Proteins from 2 H Relaxation Data. Implications for Protein Structure

Xue, Yi, Pavlova, Maria S., Ryabov, Yaroslav E., Reif, Bernd, Skrynnikov, Nikolai R.

Journal:

Journal of the American Chemical Society

Année:

2007

Langue:

english

Fichier:

PDF, 405 KB

english, 2007

32

A New Spin Probe of Protein Dynamics: Nitrogen Relaxation in 15 N− 2 H Amide Groups

Xu, Jun, Millet, Oscar, Kay, Lewis E., Skrynnikov, Nikolai R.

Journal:

Journal of the American Chemical Society

Année:

2005

Langue:

english

Fichier:

PDF, 186 KB

english, 2005

33

Probing Slow Time Scale Dynamics at Methyl-Containing Side Chains in Proteins by Relaxation Dispersion NMR Measurements: Application to Methionine Residues in a Cavity Mutant of T4 Lysozyme

Skrynnikov, Nikolai R., Mulder, Frans A. A., Hon, Bin, Dahlquist, Frederick W., Kay, Lewis E.

Journal:

Journal of the American Chemical Society

Année:

2001

Langue:

english

Fichier:

PDF, 158 KB

english, 2001

34

Protein Side-Chain Dynamics As Observed by Solution- and Solid-State NMR Spectroscopy: A Similarity Revealed

Agarwal, Vipin, Xue, Yi, Reif, Bernd, Skrynnikov, Nikolai R.

Journal:

Journal of the American Chemical Society

Année:

2008

Langue:

english

Fichier:

PDF, 494 KB

english, 2008

35

Deuterium Spin Probes of Side-Chain Dynamics in Proteins. 1. Measurement of Five Relaxation Rates per Deuteron in 13 C-Labeled and Fractionally 2 H-Enriched Proteins in Solution

Millet, Oscar, Muhandiram, D. R., Skrynnikov, Nikolai R., Kay, Lewis E.

Journal:

Journal of the American Chemical Society

Année:

2002

Langue:

english

Fichier:

PDF, 157 KB

english, 2002

36

An NMR Experiment for the Accurate Measurement of Heteronuclear Spin-Lock Relaxation Rates

Korzhnev, Dmitry M., Skrynnikov, Nikolai R., Millet, Oscar, Torchia, Dennis A., Kay, Lewis E.

Journal:

Journal of the American Chemical Society

Année:

2002

Langue:

english

Fichier:

PDF, 289 KB

english, 2002

37

Combined Analysis of 15 N Relaxation Data from Solid- and Solution-State NMR Spectroscopy

Chevelkov, Veniamin, Zhuravleva, Anastasia V., Xue, Yi, Reif, Bernd, Skrynnikov, Nikolai R.

Journal:

Journal of the American Chemical Society

Année:

2007

Langue:

english

Fichier:

PDF, 67 KB

english, 2007

38

Structural Characterization of Proteins with an Attached ATCUN Motif by Paramagnetic Relaxation Enhancement NMR Spectroscopy

Donaldson, Logan W., Skrynnikov, Nikolai R., Choy, Wing-Yiu, Muhandiram, D. Ranjith, Sarkar, Bibudhendra, Forman-Kay, Julie D., Kay, Lewis E.

Journal:

Journal of the American Chemical Society

Année:

2001

Langue:

english

Fichier:

PDF, 81 KB

english, 2001

39

Ensemble MD simulations restrained via crystallographic data: Accurate structure leads to accurate dynamics

Xue, Yi, Skrynnikov, Nikolai R.

Journal:

Protein Science

Année:

2014

Langue:

english

Fichier:

PDF, 919 KB

english, 2014

40

Protein Side-Chain Dynamics Observed by Solution- and Solid-State NMR: Comparative Analysis of Methyl 2 H Relaxation Data

Reif, Bernd, Xue, Yi, Agarwal, Vipin, Pavlova, Maria S., Hologne, Maggy, Diehl, Anne, Ryabov, Yaroslav E., Skrynnikov, Nikolai R.

Journal:

Journal of the American Chemical Society

Année:

2006

Langue:

english

Fichier:

PDF, 42 KB

english, 2006

41

Slow Dynamics in Folded and Unfolded States of an SH3 Domain

Tollinger, Martin, Skrynnikov, Nikolai R., Mulder, Frans A. A., Forman-Kay, Julie D., Kay, Lewis E.

Journal:

Journal of the American Chemical Society

Année:

2001

Langue:

english

Fichier:

PDF, 172 KB

english, 2001

42

Observing the overall rocking motion of a protein in a crystal

Ma, Peixiang, Xue, Yi, Coquelle, Nicolas, Haller, Jens D., Yuwen, Tairan, Ayala, Isabel, Mikhailovskii, Oleg, Willbold, Dieter, Colletier, Jacques-Philippe, Skrynnikov, Nikolai R., Schanda, Paul

Journal:

Nature Communications

Année:

2015

Langue:

english

Fichier:

PDF, 1.02 MB

english, 2015

43

Loss of Protein Stability due to Formation of Intermolecular Disulfide Bonds under the Effect of Oxidative Stress: Case Study of the RRM2 Domain from Neuropathological Protein TDP-43

Rabdano, Sevastyan O., Podkorytov, Ivan S., Izmailov, Sergei A., Pivovarova, Yulia V., Yakimov, Alexander P., Yuwen, Tairan, Groves, Adam, Skrynnikov, Nikolai R.

Journal:

Biophysical Journal

Année:

2016

Langue:

english

Fichier:

PDF, 40 KB

english, 2016

44

Role of electrostatic interactions in binding of peptides and intrinsically disordered proteins to their folded targets. 2. The model of encounter complex involving the double mutant of the c-Crk N-SH3 domain and peptide Sos.

Yuwen, Tairan, Xue, Yi, Skrynnikov, Nikolai R.

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 2.22 MB

english, 2016

45

MD Modeling of Oxidative Folding in Peptides and Proteins

Izmailov, Sergei A., Podkorytov, Ivan S., Skrynnikov, Nikolai R.

Journal:

Biophysical Journal

Année:

2016

Langue:

english

Fichier:

PDF, 57 KB

english, 2016

46

Interview with Robert Tycko: On amyloids, Alzheimer disease, and solid-state NMR

Skrynnikov, Nikolai R., Tycko, Robert

Journal:

Concepts in Magnetic Resonance Part A

Année:

2015

Langue:

english

Fichier:

PDF, 200 KB

english, 2015

47

Origin of anti-tumor activity of the cysteine-containing GO peptides and further optimization of their cytotoxic properties

Tyuryaeva, Irina I., Lyublinskaya, Olga G., Podkorytov, Ivan S., Skrynnikov, Nikolai R.

Journal:

Scientific Reports

Année:

2017

Langue:

english

Fichier:

PDF, 2.50 MB

english, 2017

48

Simple MD-based model for oxidative folding of peptides and proteins

Izmailov, Sergei A., Podkorytov, Ivan S., Skrynnikov, Nikolai R.

Journal:

Scientific Reports

Année:

2017

Langue:

english

Fichier:

PDF, 3.07 MB

english, 2017

49

Onset of disorder and protein aggregation due to oxidation-induced intermolecular disulfide bonds: case study of RRM2 domain from TDP-43

Rabdano, Sevastyan O., Izmailov, Sergei A., Luzik, Dmitrii A., Groves, Adam, Podkorytov, Ivan S., Skrynnikov, Nikolai R.

Journal:

Scientific Reports

Année:

2017

Langue:

english

Fichier:

PDF, 4.24 MB

english, 2017

50

A new structural arrangement in proteins involving lysine NH3 + group and carbonyl

Rogacheva, Olga N., Izmailov, Sergei A., Slipchenko, Lyudmila V., Skrynnikov, Nikolai R.

Journal:

Scientific Reports

Année:

2017

Langue:

english

Fichier:

PDF, 2.70 MB

english, 2017